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GT-ENCSEQ-INFO(1) GenomeTools Manual GT-ENCSEQ-INFO(1)

NAME

gt-encseq-info - Display meta-information about an encoded sequence.

SYNOPSIS

gt encseq info [option ...] indexname

DESCRIPTION

-nomap [yes|no]
do not map encoded sequence (gives less information) (default: no)
-mirrored [yes|no]
use mirrored encoded sequence (DNA only) (default: no)
-noindexname [yes|no]
do not output index name (default: no)
-show_alphabet [yes|no]
output alphabet definition (default: no)
-n50 [yes|no]
show N50 values (minimum length of largest sequences for covering at least 50% of total sequence length) (default: no)
-o [filename]
redirect output to specified file (default: undefined)
-gzip [yes|no]
write gzip compressed output file (default: no)
-bzip2 [yes|no]
write bzip2 compressed output file (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
09/05/2014 GenomeTools 1.5.3