PATMATDB(1e) | EMBOSS Manual for Debian | PATMATDB(1e) |
NAME¶
patmatdb - Searches protein sequences with a sequence motifSYNOPSIS¶
patmatdb
-sequence seqall
-motif string
-outfile report
patmatdb
-help
DESCRIPTION¶
patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-motif stringPatterns for patmatdb are based on the format
of pattern used in the PROSITE database. For example:
'[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed by
His, Ser, any residue other then Pro, then two of any residue followed by Pro
followed by two to four of any residue followed by Cys. The search is
case-independent, so 'AAA' matches 'aaa'.
Output section¶
-outfile reportBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
patmatdb is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this
manual page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |