PATMATDB(1e) | EMBOSS Manual for Debian | PATMATDB(1e) |
NAME¶
patmatdb - Searches protein sequences with a sequence motifSYNOPSIS¶
patmatdb -sequence seqall
-motif string
-outfile report
patmatdb -help
DESCRIPTION¶
patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-motif stringPatterns for patmatdb are based on the format of pattern
used in the PROSITE database. For example: '[DE](2)HS{P}X(2)PX(2,4)C' means
two Asps or Glus in any order followed by His, Ser, any residue other then
Pro, then two of any residue followed by Pro followed by two to four of any
residue followed by Cys. The search is case-independent, so 'AAA' matches
'aaa'.
Output section¶
-outfile reportBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
patmatdb is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |