NAME¶

vcfflatten

SYNOPSIS¶

vcfflatten [options][file] -h –help display this help message and exit. -i –ignore-errors do not flatten locus if `AF' is not specified.

DESCRIPTION¶

Removes multi-allelic sites by picking the most common alternate. Requires allele frequency specification `AF' and use of `G' and `A' to specify the fields which vary according to the Allele or Genotype. VCF file may be specified on the command line or piped as stdin.

OPTIONS¶

Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.