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.TH "VCFFLATTEN" "1" "" "vcfflatten (vcflib)" "vcfflatten (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfflatten\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfflatten\f[R] [options][file] -h \[en]help display this help
message and exit.
-i \[en]ignore-errors do not flatten locus if `AF' is not specified.
.SH DESCRIPTION
.PP
Removes multi-allelic sites by picking the most common alternate.
Requires allele frequency specification `AF' and use of `G' and `A' to
specify the fields which vary according to the Allele or Genotype.
VCF file may be specified on the command line or piped as stdin.
.SH OPTIONS
.IP
.nf
\f[C]

Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.