NAME¶

vcfcleancomplex

SYNOPSIS¶

vcfcleancomplex

DESCRIPTION¶

Removes reference-matching sequence from complex alleles and adjusts records to reflect positional change.

OPTIONS¶

Generate a VCF stream in which 'long' non-complexalleles have their position corrected.
assumes that VCF records can't overlap 5'->3'
Type: transformation
    

EXIT VALUES¶

0

Success

not 0

Failure

SEE ALSO¶

vcflib(1)

OTHER¶

LICENSE¶

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS¶

Erik Garrison and vcflib contributors.