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.TH "VCFCLEANCOMPLEX" "1" "" "vcfcleancomplex (vcflib)" "vcfcleancomplex (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfcleancomplex\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfcleancomplex\f[R]
.SH DESCRIPTION
.PP
Removes reference-matching sequence from complex alleles and adjusts
records to reflect positional change.
.SH OPTIONS
.IP
.nf
\f[C]

Generate a VCF stream in which \[aq]long\[aq] non-complexalleles have their position corrected.
assumes that VCF records can\[aq]t overlap 5\[aq]->3\[aq]

Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.