table of contents
| split(1) | The Computational Morphometry Toolkit | split(1) |
NAME¶
split - Split images
SYNOPSIS¶
split InputImage OutputImagePattern
DESCRIPTION¶
Split volume image into sub-images, i.e., to separate interleaved images into passes
OPTIONS¶
Global Toolkit Options (these are shared by all CMTK tools)¶
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Orientation Options¶
- --slice-orientation
- Define slice axis for splitting. Supported values: "axial", "sagittal", "coronal", "interleave-x", "interleave-y", "interleave-z", where the default is "axial", or use one of the following:
- --axial, -a
- Interleaved axial images [This is the default]
- --sagittal, -s
- Interleaved sagittal images
- --coronal, -c
- Interleaved coronal images
- --interleave-x, -x
- Interleaved along x axis
- --interleave-y, -y
- Interleaved along y axis
- --interleave-z, -z
- Interleaved along z axis [This is the default]
Splitting Options¶
- --factor <integer>, -f <integer>
- Interleave factor. This is the number of subimages generated. If this is set to zero, a separate 2D output image is generated for each slice in the input (in the given slice orientation). [Default: 2]
Output Options¶
- --padded, -p
- Padded output, i.e., fill in removed slices
- --output-xform-path <string>
- Optional path template (fprintf-style) for output affine transformation that maps input image coordinates to each output image. [Default: NONE]
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE¶
BUGS¶
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
| Mar 20 2024 | CMTK 3.3.1p2 |