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LAST-MAP-PROBS(1) |
User Commands |
LAST-MAP-PROBS(1) |
NAME¶
last-map-probs - Add extra column with mapping probabilities
SYNOPSIS¶
last-map-probs [options] lastal-alignments
DESCRIPTION¶
Calculate a mismap probability for each alignment. This is the probability that
the alignment does not reflect the origin of the query sequence, assuming that
one reported alignment does reflect the origin of each query.
OPTIONS¶
- -h, --help
- show this help message and exit
- -m M, --mismap=M
- don't write alignments with mismap probability > M (default: 0.01)
- -s S, --score=S
- don't write alignments with score < S (default: e+t*ln[1000])