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LAST-MAP-PROBS(1) User Commands LAST-MAP-PROBS(1)

NAME

last-map-probs - Add extra column with mapping probabilities

SYNOPSIS

last-map-probs [options] lastal-alignments

DESCRIPTION

Calculate a mismap probability for each alignment. This is the probability that the alignment does not reflect the origin of the query sequence, assuming that one reported alignment does reflect the origin of each query.

OPTIONS

show this help message and exit
don't write alignments with mismap probability > M (default: 0.01)
don't write alignments with score < S (default: e+t*ln[1000])
December 2015 last-map-probs 712