NAME¶
openms - library for LC/MS data management and analysis - metapackage
DESCRIPTION¶
This manual page documents briefly the
openms metapackage that depends on
all the components of the OpenMS software framework but the
openms-doc
documentation package. OpenMS offers an infrastructure for the development of
mass spectrometry-related software and powerful 2D and 3D visualization
solutions. OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It
provides build-in algorithms for de-novo identification and database search,
as well as adapters to other state-of-the art tools like X!Tandem, Mascot,
OMSSA… OpenMS supports the Proteomics Standard Initiative (PSI) formats
for MS data and supports easy integration of tools into workflow engines like
Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept and a unified
parameter handling.
BIBLIOGRAPHICAL REFERENCE TO BE CITED¶
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut
Reinert, and Oliver Kohlbacher (2008) OpenMS – an Open-Source Software
Framework for Mass Spectrometry.
BMC Bioinformatics, 9:163.
doi:10.1186/1471-2105-9-163.
SEE ALSO¶
libopenms(3),
topp(1),
openms-common(7),
openms(7),
openms-doc(7).
The program is documented fully in the
Tutorials, that are packaged in
openms-doc.
AUTHOR¶
This manual page was written by Filippo Rusconi <lopippo@debian.org>.
Permission is granted to copy, distribute and/or modify this document under
the terms of the GNU General Public License, Version 3, published by the Free
Software Foundation.
On a Debian system the complete text of the GNU General Public License version
3 can be found in the file `
/usr/share/common-licenses/GPL-3'.