NAME¶
openms-common - library for LC/MS data management and analysis - common files
DESCRIPTION¶
This manual page documents briefly the
openms-common package that ships
shared data for the OpenMS software framework. OpenMS offers an infrastructure
for the development of mass spectrometry-related software and powerful 2D and
3D visualization solutions. OpenMS offers analyses for various quantitation
protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH…
It provides build-in algorithms for de-novo identification and database
search, as well as adapters to other state-of-the art tools like X!Tandem,
Mascot, OMSSA… OpenMS supports the Proteomics Standard Initiative (PSI)
formats for MS data and supports easy integration of tools into workflow
engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via the TOPPtools concept
and a unified parameter handling.
BIBLIOGRAPHICAL REFERENCE TO BE CITED¶
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene
Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut
Reinert, and Oliver Kohlbacher (2008) OpenMS – an Open-Source Software
Framework for Mass Spectrometry.
BMC Bioinformatics, 9:163.
doi:10.1186/1471-2105-9-163.
SEE ALSO¶
libopenms(3),
topp(1),
openms(7),
openms-doc(7).
The program is documented fully in the
Tutorials, that are packaged in
openms-doc.
AUTHOR¶
This manual page was written by Filippo Rusconi <lopippo@debian.org>.
Permission is granted to copy, distribute and/or modify this document under
the terms of the GNU General Public License, Version 3, published by the Free
Software Foundation.
On a Debian system the complete text of the GNU General Public License version
3 can be found in the file `
/usr/share/common-licenses/GPL-3'.