NAME¶

fastaq_replace_bases

DESCRIPTION¶

fastaq_replace_bases <fasta/q in> <outfile> <old> <new> Replaces all occurences of one letter with another in a fasta/q file

positional arguments:¶

infile

Name of input fasta/q file

outfile

Name of output file

old

Base to be replaced

new

Replace with this letter

optional arguments:¶

-h, --help

show this help message and exit

AUTHOR¶

fastaq_replace_bases was originally written by Martin Hunt (mh12@sanger.ac.uk)

COPYING¶

Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.