.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH FASTAQ_REPLACE_BASES "1" "October 2014" "Fastaq" "Fastaq executables"
.SH NAME
fastaq_replace_bases
.SH DESCRIPTION
 fastaq_replace_bases <fasta/q in> <outfile> <old> <new>
.PP
Replaces all occurences of one letter with another in a fasta/q file
.SS "positional arguments:"
.TP
infile
Name of input fasta/q file
.TP
outfile
Name of output file
.TP
old
Base to be replaced
.TP
new
Replace with this letter
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit


.SH "AUTHOR"
.sp
fastaq_replace_bases was originally written by Martin Hunt (mh12@sanger.ac.uk)

.SH "COPYING"
.sp
Wellcome Trust Sanger Institute Copyright \(co 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version\&.