table of contents
AEVOL(1) | User Manual | AEVOL(1) |
/#test with man -l <file>
aevol_propagate -V or --version
aevol_propagate [-v] [-g GENER] [-i INDIR]
[ -o OUTDIR] [-S GENERALSEED]
aevol_propagate [-v] [-g GENER] [-i INDIR]
[ -o OUTDIR] [-s SELSEED] [-m
MUTSEED] [ -t STOCHSEED] [-e ENVVARSEED]
[-n ENVNOISESEED]
NAME¶
aevol - an in silico experimental evolution platformSYNOPSIS¶
aevol_propagate -h or --helpDESCRIPTION¶
Aevol is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.- aevol_propagate
- creates a fresh copy of the experiment as it was at the given generation. The generation number of the copy will be reset to 0. If you use aevol_propagate repeatedly to initialize several simulations, you should specify a different seed for each simulation, otherwise all simulations will yield exactly the same results. You can use the option -S to do so. In this case, the random drawings will be different for all random processes enabled in your simulations (mutations, stochastic gene expression, selection, migration, environmental variation, environmental noise). Alternatively, to change the random drawings for specific random processes only, do not use -S but the options -m, -s, -t, -e, -n (see below).
OPTIONS¶
- -h, --help
- print help, then exit
- -V, --version
- print version number, then exit
- -v, --verbose
- be verbose
-g, --gener GENER
specify generation number (default: that contained in file last_gener.txt, if
any)
-i, --in INDIR
specify input directory (default ".")
-o, --out OUTDIR
specify output directory (default "./output")
-S, --general-seed GENERALSEED
specify an integer to be used as a seed for random numbers. If you use
aevol_propagate repeatedly to initialize several simulations, you should
specify a different seed for each simulation, otherwise all simulations will
yield exactly the same results. If you specify this general seed, random
drawings will be different for all random processes enabled in your
simulations (mutations, stochastic gene expression, selection, migration,
environmental variation, environmental noise). To change the random drawings
for a specific random process only, do not use -S but the options below.
-s, --sel-seed SELSEED
specify an integer as a seed for random numbers needed for selection and
migration (if spatial structure is enabled).
-m, --mut-seed MUTSEED
specify an integer as a seed for random numbers needed for mutations.
-t, --stoch-seed STOCHSEED
specify an integer as a seed for random numbers needed for stochastic gene
expression.
-e, --env-var-seed ENVVARSEED
specify an integer as a seed for random numbers needed for environmental
variation.
-n, --env-noise-seed ENVNOISESEED
specify an integer as a seed for random numbers needed for environmental
noise.
SEE ALSO¶
aevol_create, aevol_run, aevol_modifyJuly 2014 | aevol 4.4 |