table of contents
other versions
- jessie 2.0.13+dfsg-1
- jessie-backports 2.1.0+dfsg-1~bpo8+1
- stretch 2.1.1+dfsg-2+b2
- testing 2.1.1+dfsg1-2
- unstable 2.1.1+dfsg1-2+b1
| CONTIG_TO_CHR_COORDS(1) | User Commands | CONTIG_TO_CHR_COORDS(1) |
NAME¶
contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coordsDESCRIPTION¶
contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole chromosome coords in a GTF, GFF, or BED file- contig_to_chr_coords.py <format_flag> <seq_contig.md> <junctions.bed|transcripts.gff|transcripts.gtf>
- for help use --help
| February 2016 | contig_to_chr_coords 2.1.0+dfsg |