.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH CONTIG_TO_CHR_COORDS "1" "February 2016" "contig_to_chr_coords 2.1.0+dfsg" "User Commands"
.SH NAME
contig_to_chr_coords \- tophat component taking NCBI seq_contig file and maps contig coords
.SH DESCRIPTION
contig_to_chr_coords:
Takes the NCBI seq_contig file and maps contig coords to whole chromosome
coords in a GTF, GFF, or BED file
.IP
contig_to_chr_coords.py <format_flag> <seq_contig.md> <junctions.bed|transcripts.gff|transcripts.gtf>
.IP
for help use \fB\-\-help\fR