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REMOVEDUP(1) User Commands REMOVEDUP(1)

NAME

removeDup - a component of subread suite

USAGE

removeDup [options] -i <input_file> -o <output_file>
Required arguments:
-i <string> Name of input file in SAM format.
-o <string> Name of output SAM file including filtered reads.
Aptional arguments:
-r <int>
Specify the duplication cutoff. All the reads mapped to a location are removed from the output if the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.
-t <string> A directory storing temporary files generated by the program.
-c <int>
The maximum number of reads the input file can have. 40 million by default.
June 2017 removeDup 1.5.1+dfsg-4~bpo8+1