other versions
- jessie-backports 1.5.1+dfsg-4~bpo8+1
- stretch 1.5.1+dfsg-4
- testing 1.6.2+dfsg-1
- unstable 1.6.3+dfsg-1
REMOVEDUP(1) | User Commands | REMOVEDUP(1) |
NAME¶
removeDup - a component of subread suiteUSAGE¶
removeDup [options] -i <input_file> -o <output_file> Required arguments:-i <string> Name of input file in SAM format.
-o <string> Name of output SAM file including
filtered reads.
Aptional arguments:
- -r <int>
- Specify the duplication cutoff. All the reads mapped to a location are removed from the output if the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.
-t <string> A directory storing temporary files
generated by the program.
- -c <int>
- The maximum number of reads the input file can have. 40 million by default.
June 2017 | removeDup 1.5.1+dfsg-4~bpo8+1 |