.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH REMOVEDUP "1" "June 2017" "removeDup 1.5.1+dfsg-4~bpo8+1" "User Commands"
.SH NAME
removeDup \- a component of subread suite
.SH USAGE

\fBremoveDup\fR [options] \fB\-i\fR <input_file> \fB\-o\fR <output_file>
.PP
Required arguments:
.HP
\fB\-i\fR <string> Name of input file in SAM format.
.HP
\fB\-o\fR <string> Name of output SAM file including filtered reads.
.PP
Aptional arguments:
.TP
\fB\-r\fR <int>
Specify the duplication cutoff. All the reads mapped to a location
are removed from the output if the number of reads mapped to this
location is equal or higher than the cutoff. 10 by default.
.HP
\fB\-t\fR <string> A directory storing temporary files generated by the program.
.TP
\fB\-c\fR <int>
The maximum number of reads the input file can have. 40 million by
default.
.PP