NAME¶
extractUnmappedSubreads.py - Extract unmapped subreads from a fasta file
DESCRIPTION¶
usage: extractUnmappedSubreads.py [-h] [--verbose] [--version] [--profile]
- [--debug]
- fasta cmp.h5 [cmp.h5 ...]
Extract unmapped subreads from a fasta file.
positional arguments:¶
- fasta
- a fasta file containing all subreads.
- cmp.h5
- input cmp.h5 files.
optional arguments:¶
- -h, --help
- show this help message and exit
- --verbose, -v
- Set the verbosity level (default: None)
- --version
- show program's version number and exit
- --profile
- Print runtime profile at exit (default: False)
- --debug
- Catch exceptions in debugger (requires ipdb) (default: False)