.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.4.
.TH EXTRACTUNMAPPEDSUBREADS.PY "1" "December 2015" "extractUnmappedSubreads.py 0.2.0" "User Commands"
.SH NAME
extractUnmappedSubreads.py \- Extract unmapped subreads from a fasta file
.SH DESCRIPTION
usage: extractUnmappedSubreads.py [\-h] [\-\-verbose] [\-\-version] [\-\-profile]
.TP
[\-\-debug]
fasta cmp.h5 [cmp.h5 ...]
.PP
Extract unmapped subreads from a fasta file.
.SS "positional arguments:"
.TP
fasta
a fasta file containing all subreads.
.TP
cmp.h5
input cmp.h5 files.
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-verbose\fR, \fB\-v\fR
Set the verbosity level (default: None)
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-\-profile\fR
Print runtime profile at exit (default: False)
.TP
\fB\-\-debug\fR
Catch exceptions in debugger (requires ipdb) (default: False)