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GT-SKETCH(1) GenomeTools Manual GT-SKETCH(1)

NAME

gt-sketch - Create graphical representation of GFF3 annotation files.

SYNOPSIS

gt sketch [option ...] image_file [GFF3_file ...]

DESCRIPTION

-pipe [yes|no]
use pipe mode (i.e., show all gff3 features on stdout) (default: no)
-flattenfiles [yes|no]
do not group tracks by source file name and remove file names from track description (default: no)
-seqid [string]
sequence region identifier default: first one in file
-start [value]
start position default: first region start
-end [value]
end position default: last region end
-width [value]
target image width (in pixel) (default: 800)
-style [string]
style file to use (default: undefined)
-format [...]
output graphics format choose from png|pdf|svg|ps (default: png)
-input [...]
input data format choose from gff|bed|gtf (default: gff)
-addintrons [yes|no]
add intron features between existing exon features (before drawing) (default: no)
-unsafe [yes|no]
enable unsafe mode for style file (default: no)
-v [yes|no]
be verbose (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9