table of contents
other versions
- bookworm 1.6.2+ds-3
- bookworm-backports 1.6.5+ds-2~bpo12+1
- testing 1.6.5+ds-2.2
- unstable 1.6.5+ds-2.2
GT-SKETCH(1) | GenomeTools Manual | GT-SKETCH(1) |
NAME¶
gt-sketch - Create graphical representation of GFF3 annotation files.
SYNOPSIS¶
gt sketch [option ...] image_file [GFF3_file ...]
DESCRIPTION¶
-pipe [yes|no]
use pipe mode (i.e., show all gff3 features on stdout)
(default: no)
-flattenfiles [yes|no]
do not group tracks by source file name and remove file
names from track description (default: no)
-seqid [string]
sequence region identifier default: first one in
file
-start [value]
start position default: first region start
-end [value]
end position default: last region end
-width [value]
target image width (in pixel) (default: 800)
-style [string]
style file to use (default: undefined)
-format [...]
output graphics format choose from png|pdf|svg|ps
(default: png)
-input [...]
input data format choose from gff|bed|gtf (default:
gff)
-addintrons [yes|no]
add intron features between existing exon features
(before drawing) (default: no)
-unsafe [yes|no]
enable unsafe mode for style file (default: no)
-v [yes|no]
be verbose (default: no)
-force [yes|no]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS¶
Report bugs to https://github.com/genometools/genometools/issues.
04/27/2024 | GenomeTools 1.6.5 |