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GT-FEATUREINDEX(1) GenomeTools Manual GT-FEATUREINDEX(1)

NAME

gt-featureindex - Retrieve annotations from a persistent feature index as GFF3 output.

SYNOPSIS

gt featureindex [option ...] indexfilename

DESCRIPTION

-range [start end]
range constraint for index query (default: undefined)
-seqid [string]
sequence region (default: undefined)
-retain [yes|no]
retain attributes (default: yes)
-backend [...]
database backend to use choose from [sqlite] (default: sqlite)
-filename [string]
filename for feature database (sqlite backend only) (default: undefined)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.
07/29/2016 GenomeTools 1.5.9