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PXMRCANAME(1) User Commands PXMRCANAME(1)

NAME

pxmrcaname - Label internal nodes with clade names.

SYNOPSIS

pxmrcaname [OPTION]...

DESCRIPTION

Label internal nodes with clade names. Takes in newick tree and MRCA file with format: MRCANAME = tip1 tip2 ... If no MRCA file is present, this will label anything that isn't labeled
-t, --treef=FILE
input newick tree file, stdin otherwise
-o, --outf=FILE
output newick file, stout otherwise
-m, --mrca=FILE
file containing MRCA declarations
-h, --help
display this help and exit
-V, --version
display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
May 2018 pxmrcaname 0.99+ds