.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.6.
.TH PXMRCANAME "1" "May 2018" "pxmrcaname 0.99+ds" "User Commands"
.SH NAME
pxmrcaname \- Label internal nodes with clade names.
.SH SYNOPSIS
.B pxmrcaname
[\fI\,OPTION\/\fR]...
.SH DESCRIPTION
Label internal nodes with clade names.
Takes in newick tree and MRCA file with format:
MRCANAME = tip1 tip2 ...
If no MRCA file is present, this will label anything
that isn't labeled
.TP
\fB\-t\fR, \fB\-\-treef\fR=\fI\,FILE\/\fR
input newick tree file, stdin otherwise
.TP
\fB\-o\fR, \fB\-\-outf\fR=\fI\,FILE\/\fR
output newick file, stout otherwise
.TP
\fB\-m\fR, \fB\-\-mrca\fR=\fI\,FILE\/\fR
file containing MRCA declarations
.TP
\fB\-h\fR, \fB\-\-help\fR
display this help and exit
.TP
\fB\-V\fR, \fB\-\-version\fR
display version and exit
.SH "REPORTING BUGS"
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues>
phyx home page: <https://github.com/FePhyFoFum/phyx>
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.