table of contents
BAM2WIG(1) | BAM2WIG(1) |
NAME¶
bam2wig - convert BAM to WIGSYNOPSIS¶
bam2wig [-r region] [-t trackname] <in.bam>OPTIONS¶
File needs to be sorted by Reference ID (i.e. target name) Use 'samtools sort <in.bam>' to such effect.Parameters:¶
-rAllows to specify a target region, e.g. 'chr3L:10-250'
This option can only be used if an index file exists, see: samtools
index
-t
string provided as track name