'\" t
.\"     Title: bam2wig
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 1.5.8
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "BAM2WIG" "1" "" "\ \&" "\ \&"
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.SH "NAME"
bam2wig \- convert BAM to WIG
.SH "SYNOPSIS"
.sp
\fBbam2wig\fP [\-r region] [\-t trackname] <in.bam>
.SH "OPTIONS"
.sp
File needs to be sorted by Reference ID (i.e. target name)
Use \(aqsamtools sort <in.bam>\(aq to such effect.
.SS "Parameters:"
.sp
\fB\-r\fP
.RS 4
Allows to specify a target region, e.g. \(aqchr3L:10\-250\(aq
This option can only be used if an index file exists, see: samtools index
.RE
.sp
\fB\-t\fP
.RS 4
string provided as track name
.RE
.SH "AUTHORS"
.sp
AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.
.SH "ADDITIONAL DOCUMENTATION"
.sp
An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.