| SUBREAD-FULLSCAN(1) | User Commands | SUBREAD-FULLSCAN(1) |
NAME¶
subread-fullscan - scans the entire genome and reports all matches of a specified sequence
USAGE¶
subread-fullscan [options] -i <index_name> <read_string>
Required arguments:
- -i <string>
- Base name of the index.
- read_string
- The read bases.
Optional arguments:
- -m <float>
- The minimum fraction of matched bases in the read, 0.8 by default
| May 2020 | subread-fullscan 2.0.1+dfsg |