.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH SUBREAD-FULLSCAN "1" "May 2020" "subread-fullscan 2.0.1+dfsg" "User Commands"
.SH NAME
subread-fullscan \- scans the entire genome and reports all matches of a specified sequence
.SH USAGE
.PP
subread\-fullscan [options] \fB\-i\fR <index_name> <read_string>
.PP
Required arguments:
.TP
\fB\-i\fR <string>
Base name of the index.
.TP
read_string
The read bases.
.PP
Optional arguments:
.TP
\fB\-m\fR <float>
The minimum fraction of matched bases in the read, 0.8 by default