table of contents
KTGETTAXIDFROMACC(1) | User Commands | KTGETTAXIDFROMACC(1) |
NAME¶
ktGetTaxIDFromAcc - explore hierarchical metagenomic data with zoomable pie charts
DESCRIPTION¶
Description:
- Translates accessions (from arguments or <stdin>) to NCBI taxonomy IDs. The accession can be bare or in the fourth field of pipe notation (e.g. "gi|12345|xx|ABC123.1|", ignoring fasta tag markers [">"]). Inputs that are bare numbers will be assumed to be taxonomy IDs already and preserved. Accessions with no taxonomy IDs in the database will return 0.
Usage:
- ktGetTaxIDFromAcc [options] [acc1 acc2 ...] [< acc_list] > tax_ID_list
- Command line example:
- ktGetTaxIDFromAcc A00001.1 A00002.1
- Fasta tag example:
- grep ">" sequence
OPTIONS¶
August 2020 | ktGetTaxIDFromAcc 2.7.1 |