.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
.TH KTGETTAXIDFROMACC "1" "August 2020" "ktGetTaxIDFromAcc 2.7.1" "User Commands"
.SH NAME
ktGetTaxIDFromAcc \- explore hierarchical metagenomic data with zoomable pie charts
.SH DESCRIPTION
Description:
.IP
Translates accessions (from arguments or <stdin>) to NCBI taxonomy IDs. The
accession can be bare or in the fourth field of pipe notation (e.g.
"gi|12345|xx|ABC123.1|", ignoring fasta tag markers [">"]). Inputs that are
bare numbers will be assumed to be taxonomy IDs already and preserved.
Accessions with no taxonomy IDs in the database will return 0.
.PP
Usage:
.IP
ktGetTaxIDFromAcc [options] [acc1 acc2 ...] [< acc_list] > tax_ID_list
.IP
Command line example:
.IP
ktGetTaxIDFromAcc A00001.1 A00002.1
.IP
Fasta tag example:
.IP
grep ">" sequence
.SH OPTIONS
.TP
\fB\-p\fR
Prepend tax IDs to the original lines (separated by tabs).
.TP
\fB\-a\fR
Append tax IDs to the original lines (separated by tabs).