NAME¶

Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308

VERSION¶

version 1.4.5

SYNOPSIS¶

Bio-Tradis provides functionality to:

• detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags
• add the tags to the reads - Bio::Tradis::AddTagsToSeq
• filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags
• remove tags - Bio::Tradis::RemoveTags
• map to a reference genome - Bio::Tradis::Map
• create an insertion site plot file - Bio::Tradis::TradisPlot

Most of these functions are available as standalone scripts or as perl modules.

AUTHOR¶

Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE¶

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007