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.IX Title "Bio::Tradis 3pm"
.TH Bio::Tradis 3pm "2020-01-11" "perl v5.30.0" "User Contributed Perl Documentation"
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.SH "NAME"
Bio::Tradis \- Bio\-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
.SH "VERSION"
.IX Header "VERSION"
version 1.4.5
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
Bio-Tradis provides functionality to:
.IP "\(bu" 4
detect TraDIS tags in a \s-1BAM\s0 file \- Bio::Tradis::DetectTags
.IP "\(bu" 4
add the tags to the reads \- Bio::Tradis::AddTagsToSeq
.IP "\(bu" 4
filter reads in a FastQ file containing a user defined tag \- Bio::Tradis::FilterTags
.IP "\(bu" 4
remove tags \- Bio::Tradis::RemoveTags
.IP "\(bu" 4
map to a reference genome \- Bio::Tradis::Map
.IP "\(bu" 4
create an insertion site plot file \- Bio::Tradis::TradisPlot
.PP
Most of these functions are available as standalone scripts or as perl modules.
.SH "AUTHOR"
.IX Header "AUTHOR"
Carla Cummins <path\-help@sanger.ac.uk>
.SH "COPYRIGHT AND LICENSE"
.IX Header "COPYRIGHT AND LICENSE"
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
.PP
This is free software, licensed under:
.PP
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\&  The GNU General Public License, Version 3, June 2007
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