NAME¶
dcm2nii - convert DICOM or PAR/REC image into the NIfTI format
SYNOPSIS¶
dcm2nii <options> <sourcenames>
OPTIONS¶
- -a Anonymize [remove identifying information]: Y,N =
Y
- -b load settings from specified inifile, e.g. '-b
/etc/mricron.ini'
- -c Collapse input folders: Y,N = N
- -d Date in filename [filename.dcm ->
20061230122032.nii]: Y,N = Y
- -e events (series/acq) in filename [filename.dcm
-> s002a003.nii]: Y,N = Y
- -f Source filename [e.g. filename.par ->
filename.nii]: Y,N = Y
- -g gzip output, filename.nii.gz [ignored if '-n n']:
Y,N = Y
- -i ID in filename [filename.dcm -> johndoe.nii]:
Y,N = Y
- -n output .nii file [if no, create .hdr/.img pair]:
Y,N = Y
- -o Output Directory, e.g. '/tmp' (if unspecified,
source directory is used)
- -p Protocol in filename [filename.dcm ->
TFE_T1.nii]: Y,N = Y
- -r Reorient image to nearest orthogonal: Y,N
- -s SPM2/Analyze not SPM5/NIfTI [ignored if '-n y']:
Y,N = N
- -v Convert every image in the directory: Y,N =
Y
- -x Reorient and crop 3D NIfTI images: Y,N = N
You can also set defaults by editing /home/michael/.dcm2nii/dcm2nii.ini
EXAMPLES¶
dcm2nii -a y /home/joe/Documents/dcm/IM_0116
AUTHOR¶
dcm2nii was written by Chris Rorden.
This manual page was written by Michael Hanke <michael.hanke@gmail.com>,
for the Debian project (but may be used by others).
SEE ALSO¶
mricron(1)
- MRIcron Homepage:
http://www.cabiatl.com/mricro/mricron/