NAME¶
TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated
numerical scores created by the Gibbs program
SYNOPSIS¶
DESCRIPTION¶
TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed
motifs and associated numerical scores created by the Gibbs program. You do
not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They
are created by running TFBS::PatternGen::Gibbs
FEEDBACK¶
Please send bug reports and other comments to the author.
AUTHOR - Boris Lenhard and Wynand Alkema¶
Boris Lenhard <Boris.Lenhard@cgb.ki.se> Wynand Alkema
<Wynand.Alkema@cgb.ki.se>
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are preceded with an underscore.
MAP¶
Title : MAP
Usage : my $map_score = $motif->MAP;
Function: returns MAP score for the detected motif
(This is a backward compatibility method. For consistency,
you should use $motif->tag('MAP_score') instead
Returns : float (a scalar)
Args : none
Other methods¶
TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which
inherits from TFBS::Matrix. Please consult the documentation of those modules
for additional available methods.