new¶

fromText¶

toText¶

sort¶

addEvidence($category, $type, $initials, $attributes [, $date])¶

 Title:    addEvidence
 Usage:    $evidenceTag = $entry->Stars->EV->addEvidence($category,
                                                         $type, 
                                                         $initials,
                                                         $attributes 
                                                         [, $date])
 Function: adds the evidence to the EV block if it does not yet exist 
           or returns the correct evidence tag if the evidence already exists, 
           possibly with a different date.
 Args:    $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
          $type: the evidence type
          $initials: The initals of the person doing the update.
                     For programs this should be '-'.
          $attributes: the attributes of the evidence
          $date: optional. If present, it must be in standard SWISS-PROT 
                 date format. If not present the current date will be used.
 Returns: The correct evidence tag.

updateEvidence($category, $type, $initials, $attributes [, $date])¶

 Title:    updateEvidence
 Usage:    $evidenceTag = $entry->Stars->EV->updateEvidence($category, 
                                                            $type, 
                                                            $initials,
                                                            $attributes 
                                                            [, $date])
 Function: updates the evidence to the EV block to $date or inserts it 
           if it does not yet exist.
 Args:    $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
          $type: the evidence type
          $initials: The initals of the person doing the update.
                     For programs this should be '-'.
          $attributes: the attributes of the evidence
          $date: optional. If present, it must be in standard SWISS-PROT 
                 date format. If not present the current date will be used.
 Returns: The correct evidence tag.

Name¶

SWISS::Stars::EV.pm

Description¶

SWISS/Stars/EV.pm represents the evidence section within an SWISS-PROT + TrEMBL entry. See http://www3.ebi.ac.uk/~sp/intern/projects/evidenceTags/index.html For a usage example, see evTest.pl in the Swissknife package.

Inherits from SWISS::ListBase.pm¶

Attributes¶

"list" Each element of the list describes one evidence, itself represented as an array.