Name¶
SWISS::DTs
Description¶
SWISS::DTs represents the DT lines within an Swiss-Prot + TrEMBL entry as
specified in the user manual
http://www.expasy.org/sprot/userman.html .
Inherits from¶
SWISS::BaseClass.pm
Attributes¶
- "CREATED_date"
- Creation date
- "ANN_date"
- Last annotation update
- "SQ_date"
- Last Sequence update
- "CREATED_rel"
- Created for release
- "ANN_rel"
- Last annotation for release
- "SQ_rel"
- Last sequence update for release
- "ANN_version"
- Version number for entry annotation
- "SQ_version"
- Version number for sequence
Methods¶
Standard methods¶
- new
- fromText
- toText
- sort
Writing methods¶
- set_Created ($date, $release)
- set_AnnotationUpdate ($date, $release[, $version])
- set_SequenceUpdate ($date, $release[, $version])
TRANSITION¶
The format of the DT line will change in early 2004 from:
DT 01-JUL-1993 (Rel. 26, Created)
DT 01-JUL-1993 (Rel. 26, Last sequence update)
DT 28-FEB-2003 (Rel. 41, Last annotation update)
to:
DT 01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1993, sequence version 36.
DT 28-FEB-2003, entry version 54.
This module supports both formats. To convert an entry from the old to the new
format, do:
$entry->DTs->CREATED_rel("UniProtKB/Swiss-Prot");
$entry->DTs->ANN_version(54);
$entry->DTs->SQ_version(36);