NAME¶
Bio::DB::Bam::PileupWrapper -- Add high-level methods to Bio::DB::Bam::Pileup
SYNOPSIS¶
See "The generic
fetch() and
pileup() methods" in
Bio::DB::Sam for usage of the
pileup() method.
DESCRIPTION¶
See Bio::DB::Bam::Pileup for documentation of this object's methods. This class
is used by the high-level API to return Bio::DB::Bam::AlignWrapper objects
from the call to
alignment() rather than Bio::DB::Bam::Alignment.
SEE ALSO¶
Bio::Perl, Bio::DB::Sam, Bio::DB::Bam::Constants
AUTHOR¶
Lincoln Stein <lincoln.stein@oicr.on.ca>. <lincoln.stein@bmail.com>
Copyright (c) 2009 Ontario Institute for Cancer Research.
This package and its accompanying libraries is free software; you can
redistribute it and/or modify it under the terms of the GPL (either version 1,
or at your option, any later version) or the Artistic License 2.0. Refer to
LICENSE for the full license text. In addition, please see DISCLAIMER.txt for
disclaimers of warranty.