NAME¶
Bio::Tools::EUtilities::Query::GlobalQuery - container class for egquery data
SYNOPSIS¶
#### should not create instance directly; Bio::Tools::EUtilities does this ####
my $parser = Bio::Tools::EUtilities->new(-eutil => 'egquery',
-term => 'BRCA1');
# $gquery is a Bio::Tools::EUtilities::Query::GlobalQuery
while (my $gquery = $parser->next_GlobalQuery) {
print $gquery->to_string."\n"; # stringify
print "DB:".$gquery->get_db."\t".$gquery->get_count;
}
DESCRIPTION¶
This is a simple container class for egquery data. Currently this just contains
various accessors for the data, such as
get_database(),
get_count(), etc. for each item in a global query.
FEEDBACK¶
Mailing Lists¶
User feedback is an integral part of the evolution of this and other Bioperl
modules. Send your comments and suggestions preferably to one of the Bioperl
mailing lists. Your participation is much appreciated.
bioperl-l@lists.open-bio.org - General discussion
http://www.bioperl.org/wiki/Mailing_lists - About the mailing lists
Support¶
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive
experts will be able look at the problem and quickly address it. Please
include a thorough description of the problem with code and data examples if
at all possible.
Reporting Bugs¶
Report bugs to the Bioperl bug tracking system to help us keep track the bugs
and their resolution. Bug reports can be submitted via the web.
https://redmine.open-bio.org/projects/bioperl/
AUTHOR¶
Email cjfields at bioperl dot org
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
get_term¶
Title : get_term
Usage : $st = $qd->get_term;
Function: retrieve the term for the global search
Returns : string
Args : none
get_database¶
Title : get_database
Usage : $ct = $qd->get_database;
Function: retrieve the database
Returns : string
Args : none
get_count¶
Title : get_count
Usage : $ct = $qd->get_count;
Function: retrieve the count for the database
Returns : string
Args : none
get_status¶
Title : get_status
Usage : $st = $qd->get_status;
Function: retrieve the query status for database in db()
Returns : string
Args : none
Title : get_menu_name
Usage : $ct = $qd->get_menu_name;
Function: retrieve the full name for the database in db()
Returns : string
Args : None
to_string¶
Title : to_string
Usage : $foo->to_string()
Function : converts current object to string
Returns : none
Args : (optional) simple data for text formatting
Note : Used generally for debugging and for the print_GlobalQuery method