NAME¶
hmmconvert - convert profile file to a HMMER format
SYNOPSIS¶
hmmconvert [options] <hmmfile>
DESCRIPTION¶
The
hmmconvert utility converts an input profile file to different HMMER
formats.
By default, the input profile can be in any HMMER format, including old/obsolete
formats from HMMER2, ASCII or binary; the output profile is a current HMMER3
ASCII format.
OPTIONS¶
- -h
- Help; print a brief reminder of command line usage and all
available options.
- -a
- Output profiles in ASCII text format. This is the default.
- -b
- Output profiles in binary format.
- -2
- Output in legacy HMMER2 ASCII text format, in ls (glocal)
mode. This allows HMMER3 models to be converted back to a close
approximation of HMMER2, for comparative studies.
- --outfmt <s>
- Output in a HMMER3 ASCII text format other then the most
current one. Valid choices for <s> are 3/b or 3/a. The
current format is 3/b, and this is the default. There is a slightly
different format 3/a that was used in some alpha test code.
SEE ALSO¶
See
hmmer(1) for a master man page with a list of all the individual man
pages for programs in the HMMER package.
For complete documentation, see the user guide that came with your HMMER
distribution (Userguide.pdf); or see the HMMER web page (@HMMER_URL@).
COPYRIGHT¶
@HMMER_COPYRIGHT@
p@HMMER_LICENSE@
For additional information on copyright and licensing, see the file called
COPYRIGHT in your HMMER source distribution, or see the HMMER web page
(@HMMER_URL@).
AUTHOR¶
Eddy/Rivas Laboratory
Janelia Farm Research Campus
19700 Helix Drive
Ashburn VA 20147 USA
http://eddylab.org
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