table of contents
make_ndx(1) | GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c | make_ndx(1) |
NAME¶
make_ndx - makes index filesSYNOPSIS¶
make_ndx -f conf.gro -n index.ndx -o index.ndx -[no]h -[no]version -nice int -natoms intDESCRIPTION¶
Index groups are necessary for almost every gromacs program. All these programs can generate default index groups. You ONLY have to use make_ndx when you need SPECIAL index groups. There is a default index group for the whole system, 9 default index groups for proteins, and a default index group is generated for every other residue name.FILES¶
-f conf.gro Input, Opt.Structure file: gro g96 pdb tpr etc.
Index file
Index file
OTHER OPTIONS¶
-[no]hnoPrint help info and quit
Print version info and quit
Set the nicelevel
set number of atoms (default: read from coordinate or index file)
SEE ALSO¶
gromacs(7)Mon 4 Apr 2011 |