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g_xrama(1) GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c g_xrama(1)

NAME

g_xrama - shows animated Ramachandran plots
 
VERSION 4.5.4-dev-20110404-bc5695c

SYNOPSIS

g_xrama -f traj.xtc -s topol.tpr -[no]h -[no]version -nice int -b time -e time -dt time

DESCRIPTION

g_xrama shows a Ramachandran movie, that is, it shows the Phi/Psi angles as a function of time in an X-Window.
 
Static Phi/Psi plots for printing can be made with g_rama.
 
 
Some of the more common X command line options can be used:
 
-bg, -fg change colors, -font fontname, changes the font.

FILES

-f traj.xtc Input
Trajectory: xtc trr trj gro g96 pdb cpt
 
-s topol.tpr Input
Run input file: tpr tpb tpa
 

OTHER OPTIONS

-[no]hno
Print help info and quit
 
-[no]versionno
Print version info and quit
 
-nice int 0
Set the nicelevel
 
-b time 0
First frame (ps) to read from trajectory
 
-e time 0
Last frame (ps) to read from trajectory
 
-dt time 0
Only use frame when t MOD dt = first time (ps)
 

SEE ALSO

gromacs(7)
 
More information about GROMACS is available at <http://www.gromacs.org/>.
Mon 4 Apr 2011