table of contents
GLAM2-PURGE(1) | glam2 Manual | GLAM2-PURGE(1) |
NAME¶
glam2-purge - Removes redundant sequences from a FASTA fileSYNOPSIS¶
glam2-purge
file score [options]
DESCRIPTION¶
OPTIONS¶
-nSequences are DNA (default: protein).
-b
Use blast heuristic method (default for
protein).
-e
Use an exhaustive method (default for
DNA).
-q
Keep first sequence in the set.
-x
Use xnu to mask protein tandem repeats.
SEE ALSO¶
glam2(1), glam2format(1), glam2mask(1), glam2scan(1), xnu(1) The full Hypertext documentation of GLAM2 is available online at http://bioinformatics.org.au/glam2/ or on this computer in /usr/share/doc/glam2/.REFERENCES¶
Purge was written by Andy Neuwald and is described in more detail in Neuwald et al., "Gibbs motif sampling: detection of bacterial outer membrane protein repeats", Protein Science, 4:1618–1632, 1995. Please cite it if you use Purge. If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and deletions, PLoS Computational Biology (in press).AUTHORS¶
Andrew Neuwald- Author of purge, renamed glam2-purge in Debian.
- Modified purge to be ANSI standard C and improved the user interface.
- Modified purge to be ANSI standard C and improved the user interface.
- Formatted this manpage in DocBook XML for the Debian distribution.
COPYRIGHT¶
The source code and the documentation of Purge and GLAM2 are released in the public domain.05/19/2008 | GLAM2 1056 |