NOTSEQ(1e) | EMBOSS Manual for Debian | NOTSEQ(1e) |
NAME¶
notseq - Write to file a subset of an input stream of sequencesSYNOPSIS¶
notseq
-sequence seqall
-exclude string
-outseq seqoutall [
-junkoutseq seqoutall]
notseq
-help
DESCRIPTION¶
notseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Edit" command group(s).OPTIONS¶
Input section¶
-sequence seqallRequired section¶
-exclude stringEnter a list of sequence names or accession
numbers to exclude from the sequences read in. The excluded sequences will be
written to the file specified in the 'junkout' parameter. The remainder will
be written out to the file specified in the 'outseq' parameter. The list of
sequence names can be separated by either spaces or commas. The sequence names
can be wildcarded. The sequence names are case independent. An example of a
list of sequences to be excluded is: myseq, hs*, one two three a file
containing a list of sequence names can be specified by giving the file name
preceeded by a '@', eg: '@names.dat'
Output section¶
-outseq seqoutall -junkoutseq seqoutallThis file collects the sequences which you
have excluded from the main output file of sequences. Default value:
/dev/null
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
notseq is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this
manual page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |