other sections
COMPLEX(1e) | EMBOSS Manual for Debian | COMPLEX(1e) |
NAME¶
complex - Find the linguistic complexity in nucleotide sequencesSYNOPSIS¶
complex
-sequence seqall
-lwin integer
-step integer
-jmin integer
-jmax integer
-omnia toggle -sim integer
-freq boolean
-print boolean
-outfile outfile
-ujtablefile outfile
-outseq seqoutall
complex
-help
DESCRIPTION¶
complex is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Composition" command group(s).OPTIONS¶
Input section¶
-sequence seqall -lwin integerDefault value: 100
-step integer
Displacement of the window over the sequence
Default value: 5
-jmin integer
Default value: 4
-jmax integer
Default value: 6
Advanced section¶
-omnia toggleCalculate over a set of sequences Default
value: N
-sim integer
Calculate the linguistic complexity by
comparison with a number of simulations having a uniform distribution of
bases
-freq boolean
Execute the simulation of a sequence based on
the base frequency of the original sequence Default value: N
Output section¶
-print booleanGenerate a file named UjTable containing the
values of Uj for each word j in the real sequence(s) and in any simulated
sequences Default value: N
-outfile outfile
-ujtablefile outfile
Default value: complex.ujtable
-outseq seqoutall
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
complex is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this
manual page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |