CATHPARSE(1e) | EMBOSS Manual for Debian | CATHPARSE(1e) |
NAME¶
cathparse - Generates DCF file from raw CATH files.SYNOPSIS¶
cathparse
-listfile infile
-domfile infile
-namesfile infile
-outfile outfile
-logfile outfile
cathparse
-help
DESCRIPTION¶
cathparse is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database creation" command group(s).OPTIONS¶
Input section¶
-listfile infileThis option specifies the name of raw CATH
classification file (caths.list.vX.X) (input). The raw CATH parsable files
(classification and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: caths.list.v2.4
-domfile infile
This option specifies the name of raw CATH
classification file (domlist.vX.X) (input). The raw CATH parsable files
(classification and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: domlist.v2.4
-namesfile infile
This option specifies the name of raw CATH
classification file (CAT.names.all.vX.X) (input). The raw CATH parsable files
(classification and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4
Output section¶
-outfile outfileThis option specifies the name of CATH DCF
file (domain classification file) (output). A 'domain classification file'
contains classification and other data for domains from SCOP or CATH, in DCF
format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE.
Domain sequence information can be added to the file by using DOMAINSEQS.
Default value: Ecath.dat
-logfile outfile
This option specifies the name of the
CATHPARSE log file. Default value: cathparse.log
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
cathparse is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this
manual page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.08/11/2010 | DOMAINATRIX 0.1.0+20100721 |