NAME¶
transformix - apply geometric transform to an image
SYNOPSIS¶
transformix mandatory-args [
optional-args]
DESCRIPTION¶
transformix applies a transform on an input image and/or generates a deformation
field. The transform is specified in the transform-parameter file.
OPTIONS¶
Call transformix from the command line with mandatory arguments:
- -out output directory
- -tp transform-parameter file, only 1
Optional extra commands:
- -in input image to deform
- -def file containing input-image points
- the point are transformed according to the specified
transform-parameter file use "-def all" to transform all points
from the input-image, which effectively generates a deformation
field.
- -jac use "-jac all" to generate an image
with the determinant of the spatial Jacobian
- -jacmat use "-jacmat all" to generate an
image with the spatial Jacobian matrix at each voxel
- -priority set the process priority to high or
belownormal (Windows only)
- -threads set the maximum number of threads of
transformix
- At least one of the options "-in",
"-def", "-jac", or "-jacmat" should be
given.
The transform-parameter file must contain all the information necessary for
transformix to run properly. That includes which transform to use, with which
parameters, etc. For a usable transform-parameter file, see the output of
elastix.
SEE ALSO¶
elastix(1)
Check the website
http://elastix.isi.uu.nl, or mail
elastix.support@gmail.com.