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Dotur(1) | General Commands Manual | Dotur(1) |
NAME¶
dotur - A program for calculating descriptive statistics for sequence librariesSYNOPSIS¶
dotur [ -i Iterations (<1000>)] [-c ClusterMethod (<f>, n, a)] [ -p Precision (10, <100>, 1000, 10000)] [-l] [-j] <file>OPTIONS¶
- -i:
- Number of iterations (default = 1000)
- -c:
- Clustering method - (f) furthest neighbor, (n) nearest neighbor, (a) average neighbor (default = f)
- -p:
- Precision of distances for output, increasing can dramatically lengthen execution times - 10, 100, 1000, 10000 (default = 100)
- -l:
- Input file is lower triangular (default = square matrix)
- -r:
- Calculates rarefaction curves for each parameter, can dramatically lengthen execution times. Simple rarefaction curve always calculated.
-stop:
Stops clustering when cutoff has been reached.
-wrep:
Samples with replacement.
- -jumble:
- Jumble the order of the distance matrix.
- -sim:
- Converts similarity score to distance (D=1-S).
DESCRIPTION¶
This is the Debian GNU/Linux version of dotur.AUTHOR¶
This manual page was compiled from the package description and the output of help2man by Thorsten Alteholz <debian@alteholz.de>, for the Debian GNU/Linux system (but may be used by others).June 3, 2011 | DOTUR |