NAME¶
statistics - Image statistics
SYNOPSIS¶
statistics [options] ImageFile0 [ImageFile1 ...]
DESCRIPTION¶
Statistical computations on image pixel intensities, i.e., means and standard
deviations
OPTIONS¶
- --help
- Write list of basic command line options to standard
output.
- --help-all
- Write complete list of basic and advanced command line
options to standard output.
- --wiki
- Write list of command line options to standard output in
MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard
output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for
backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads
and OpenMP).
Main Options¶
- --label, -l
- Interpret voxel values as labels
- --gray, -g
- Interpret voxel values as gray values (default) [This is
the default]
- --log, -L
- Apply log() function to data
- --exp, -e
- Apply exp() function to data
- --num-bins <integer>, -n
<integer>
- Number of histogram bins. [Default: 256]
- --column, -C
- Write statistics in column format rather than line
format.
- --e-notation, -E
- Write floating point numbers in #e# notation (i.e., 1e-3
instead of 0.001)
- --mask <string>, -m
<string>
- Analyze region based on binary mask file [Default:
disabled]
- --Mask <string>, -M
<string>
- Analyze regions separately based on mask file (label
field). [Default: NONE]
- --mask-output-all-up-to <integer>
- Output results for all mask values up to given value, even
such that do not actually appear in the mask. [Default: 0]
- --percentile <double>, -p
<double>
- Add value to list of percentile to compute.
AUTHORS¶
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis,
Calvin R. Maurer, and Daniel B. Russakoff
LICENSE¶
http://www.fsf.org/licensing/licenses/gpl.html
BUGS¶
Report bugs at
http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS¶
From April 2009 through September 2011, CMTK Development and Maintenance was
supported by the National Institute of Biomedical Imaging and Bioengineering
under Grant No.R01 EB008381 (PI: Torsten Rohlfing).
